fix a bin bug, python fixes

INSTALL.sh

@@ -1,9 +1,8 @@
 #!/bin/bash
 
 # get initial directories setup 
-mv ~/bin/* $(pwd)/bin/
-rm -rf ~/bin/
 ln -s $(pwd)/bin ~/bin
+
 if [[ $OSTYPE == darwin* ]]; then
     ~/bin/setup-usr-local.sh
 fi

bash_aliases

@@ -9,8 +9,6 @@ alias ppjson="python -m json.tool"
 
 # Addgene specific
 alias adocs='cd $ADDGENE_CORE_REPO_DIR/docs && make html && open $ADDGENE_CORE_REPO_DIR/docs/build/html/index.html'
-alias deploy_all="fab -R silver-web deploy:master &&  fab -R gold-web deploy:master && fab -R jupyter fab -R jupyter deploy_jupyter && fab --parallel avail_staging_hosts deploy:master"
-alias deploy_all_migration="fab -R silver-web deploy:master,1 &&  fab -R gold-web deploy:master,1 && fab -R jupyter deploy_jupyter & fab --parallel avail_staging_hosts deploy:master,1"
 alias aenv='env | sort | grep ADDGENE'
 alias sl="source local.env.$(basename $SHELL)"
 
@@ -56,28 +54,4 @@ function h () {
         fi
 }
 
-if [ -n "$SSH_CLIENT" ] || [ -n "$SSH_TTY" ]; then
-    export PS1="<ssh>$PS1"
-fi
 alias stabbats='sudo killall VDCAssistant && open https://appear.in/stab-bats'
-
-
-function GitHub()
-{
-    git_url=`git config --get remote.origin.url`
-    if [[ $git_url == https://github* ]];
-    then
-        url=${git_url%.git}
-    else
-       if [[ $git_url == git@github.com* ]]
-       then
-            url="https://github.com/${${git_url:15}%.git}"
-       else
-	       echo "ERROR: Remote origin is invalid" && return false;
-       fi
-    fi
-    open $url
-}
-
-alias github=GitHub
-

bin/mov_to_gif.sh

@@ -7,6 +7,8 @@ if [[ $3 ]]; then
 else
     END=$(ffprobe -loglevel error -show_streams $NAME | grep duration\= | cut -f2 -d=)
 fi
+END=$(echo -n $END | cut -d ' ' -f 1)
+echo $END
 echo "Making a gif of $NAME from $START seconds to $END seconds"
 
 ffmpeg -y -ss $START -t $END -i $NAME -vf fps=24,scale=640:-1:flags=lanczos,palettegen temp_palette.png

bin/mysql_in_ram.sh

@@ -1,10 +1,4 @@
 #!/bin/bash
-set -e
-set -x
-set -v
-
-if [ $OSTYPE = "darwin16.0" ];then
-    umount /Volumes/ramdisk
 mysql.server stop
 killall mysqld
 killall mysqld
@@ -15,19 +9,3 @@ if [ $OSTYPE = "darwin16.0" ];then
 diskutil erasevolume HFS+ "ramdisk" `hdiutil attach -nomount ram://2048000`
 cp -r /usr/local/var/mysql /Volumes/ramdisk
 mysql.server start
-else
-    sudo service mysql stop
-    
-    # This works on Ubuntu 14.04, but not 16.04:
-    # sudo mkdir -p /mnt/mysql-data-orig
-    # sudo mount --bind /var/lib/mysql /mnt/mysql-data-orig
-    # sudo mount -t tmpfs -o size=32G,uid=mysql,gid=mysql,mode=700 tmpfs /var/lib/mysql
-    # sudo sh -c 'cp -avi /mnt/mysql-data-orig/* /var/lib/mysql/'
-    
-    # This works on 16.04 and maybe elsewhere too
-    sudo mkdir -p /mnt/mysql-ram
-    sudo mount -t tmpfs -o size=8G,uid=mysql,gid=mysql,mode=700 tmpfs /mnt/mysql-ram
-    sudo mount -t aufs -o br:/mnt/mysql-ram:/var/lib/mysql=ro aufs /var/lib/mysql
-    
-    sudo service mysql start
-fi

bin/oh_fuck.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+git tag temp$RANDOM
+git reset --hard HEAD^
+git push --force
+echo "There. I fixed your stupid mistake Tyrel"

bin/subl

@@ -0,0 +1 @@
+/Applications/Sublime Text.app/Contents/SharedSupport/bin/subl

bin/virtualenv-auto-activate.sh

@@ -0,0 +1,76 @@
+#!/bin/bash
+# virtualenv-auto-activate.sh
+# 
+# Installation:
+#   Add this line to your .bashrc or .bash-profile:
+#
+#       source /path/to/virtualenv-auto-activate.sh
+#
+#   Go to your project folder, run "virtualenv .venv", so your project folder
+#   has a .venv folder at the top level, next to your version control directory.
+#   For example:
+#   .
+#   ├── .git
+#   │   ├── HEAD
+#   │   ├── config
+#   │   ├── description
+#   │   ├── hooks
+#   │   ├── info
+#   │   ├── objects
+#   │   └── refs
+#   └── .venv
+#       ├── bin
+#       ├── include
+#       └── lib
+#
+#   The virtualenv will be activated automatically when you enter the directory.
+
+# Check for virtualenvwrapper
+if type workon >/dev/null 2>&1; then
+  VENV_WRAPPER=true
+else
+  VENV_WRAPPER=false
+fi
+
+function _virtualenv_auto_activate() {
+    if [ -e ".venv" ]; then
+        # Check for symlink pointing to virtualenv
+        if [ -L ".venv" ]; then
+          _VENV_PATH=$(readlink .venv)
+          _VENV_WRAPPER_ACTIVATE=false
+        # Check for directory containing virtualenv
+        elif [ -d ".venv" ]; then
+          _VENV_PATH=$(pwd -P)/.venv
+          _VENV_WRAPPER_ACTIVATE=false
+        # Check for file containing name of virtualenv
+        elif [ -f ".venv" -a $VENV_WRAPPER = "true" ]; then
+          _VENV_PATH=$WORKON_HOME/$(cat .venv)
+          _VENV_WRAPPER_ACTIVATE=true
+        else
+          return
+        fi
+
+        # Check to see if already activated to avoid redundant activating
+        if [ "$VIRTUAL_ENV" != $_VENV_PATH ]; then
+            if $_VENV_WRAPPER_ACTIVATE; then
+              _VENV_NAME=$(basename $_VENV_PATH)
+              workon $_VENV_NAME
+            else
+              _VENV_NAME=$(basename `pwd`)
+              VIRTUAL_ENV_DISABLE_PROMPT=1
+              source .venv/bin/activate
+              _OLD_VIRTUAL_PS1="$PS1"
+              PS1="($_VENV_NAME)$PS1"
+              export PS1
+            fi
+            echo Activated virtualenv \"$_VENV_NAME\".
+        fi
+    fi
+}
+
+export PROMPT_COMMAND=_virtualenv_auto_activate
+if [ -n "$ZSH_VERSION" ]; then
+  function chpwd() {
+    _virtualenv_auto_activate
+  }
+fi

bin/wha.scpt

@@ -0,0 +1 @@
+display notification \"Your free upgrade to Windows 10 is ready. Please click here to start the download.\" with title \"Microsoft\"

zprofile.local

@@ -1,43 +1,34 @@
 #!/usr/local/bin/zsh
 
 export EDITOR=vim
-export VISUAL=vim
+export MP_FULLNAME="Tyrel Souza"
-export GOPATH=$HOME/go
+export VISUAL=$EDITOR
 export LANG=en_US.UTF-8
-export LC_ALL=en_US.UTF-8
+export LC_ALL=$LANG
 export LESS=' -R '
 export LESSOPEN="| /usr/local/bin/src-hilite-lesspipe.sh %s"
-export NODE_PATH="$NPM_PACKAGES/lib/node_modules:$NODE_PATH"
-export NPM_PACKAGES="${HOME}/.npm-packages"
-export PHP_AUTOCONF="/usr/local/bin/autoconf"
 
-# Virtualenv + Wrapper
+# Python Virtualenv + Wrapper
 export PROJECT_HOME=$HOME/AddGeneProjects
 export WORKON_HOME=$HOME/.virtualenvs
 if [ -e $HOME/.local/bin/virtualenvwrapper.sh ];then
     source $HOME/.local/bin/virtualenvwrapper.sh
-fi
+elif [ -e /usr/local/bin/virtualenvwrapper.sh ]; then
-if [ -e /usr/local/bin/virtualenvwrapper.sh ]; then
     source /usr/local/bin/virtualenvwrapper.sh
 fi
+export PYTHONSTARTUP=$HOME/.pythonstartup.py
+
+# Node stuff
+export NODE_PATH="$NPM_PACKAGES/lib/node_modules:$NODE_PATH"
+export NPM_PACKAGES="${HOME}/.npm-packages"
 export PATH="$NPM_PACKAGES/bin:$GOPATH/bin:$HOME/bin:$PATH"
+
+# Go Stuff
+export GOPATH=$HOME/go
+
+# GPG stuff
 if [[ $OSTYPE == "*darwin*" ]];then
 	export PATH="/usr/local/opt/gnupg/libexec/gpgbin:$PATH"
 fi
 #
-if [ -z "$SSH_AUTH_SOCK" ] ; then
-  eval `ssh-agent -s`
-  ssh-add ~/.ssh/id_rsa
-fi
-#
-if [ -e ~/.ssh/id_addgene ];then
-  ssh-add ~/.ssh/id_addgene
-fi
-export MP_FULLNAME="Tyrel Souza"
-
 source ~/.bash_aliases
-if [ -e $HOME/.credentials ];then
-	source $HOME/.credentials
-fi
-export PYTHONSTARTUP=$HOME/.pythonstartup.py
-eval "$(pyenv init -)"