EasyGui interface
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0ca5217ddc
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218
main.py
218
main.py
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@ -2,9 +2,9 @@ import os
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import json
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import datetime
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import logging
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import sys
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import pandas as pd
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import dropbox
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from dateutil.relativedelta import relativedelta
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import easygui
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@ -21,63 +21,89 @@ class AttributionReport(object):
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def __init__(self, credentials_file, months=6, footer_length=None):
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self.months = months
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self.footer_length = footer_length
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self.PI_COLUMN = "PI_Name"
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self.ORG_COLUMN = "Org Name"
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self.column_order = ["Addgene Assigned",
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"Plasmid ID",
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"Deposit ID",
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"Institute",
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"PI Name",
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"Date Received",
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"Original Date",
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"Original ORG",
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"Original PI"]
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self.OUTPUT_COLUMN_ORDER = ["Addgene Assigned",
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"Plasmid ID",
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"Deposit ID",
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"Institute",
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"PI Name",
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"Date Received",
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"Original Date",
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"Original ORG",
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"Original PI"]
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with open(credentials_file, "r") as cred_f:
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creds = json.loads(cred_f.read())
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self.ACCEPTABLE_EXTENSIONS = ["*.csv",
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"*.xls",
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"*.xlsx"]
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self.app_key = creds['app_key']
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self.app_secret = creds['app_secret']
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# columns that need to be in the files
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self.REQUIRED_SF_COLUMNS = ["First Name",
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"Last Name",
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"Account Name",
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"Date",
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"Assigned"]
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self.REQUIRED_DP_COLUMNS = ["Org Name",
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"Deposit ID",
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"Plasmid ID",
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"PI_Name",
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"Date Received"]
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if not creds.get("access_token", None):
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self.authorize()
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# After load and merging, delete these columns
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self.SF_TRIM_COLUMNS = ["Subject",
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"First Name",
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"Last Name",
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"Created Date",
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"LIMS Organization ID",
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"Account Description"]
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self.DP_TRIM_COLUMNS = ["Org ID",
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"Deposit Status",
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"PI_ID",
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"Date Available",
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"# Orders",
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"# Plasmids in the Deposit",
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"Addgene Contact",
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"Country"]
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self.DEFAULT_DIR = self.get_dropbox_dir()
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def get_dropbox_dir(self):
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"""
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Windows and Mac get dropox dir for Business or fallback to personal
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"""
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if os.name == "nt":
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dropbox_file = os.path.join(os.getenv('APPDATA'), 'Dropbox', 'info.json')
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else:
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self.access_token = creds['access_token']
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self.user_id = creds['user_id']
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dropbox_file = os.path.expanduser("~/.dropbox/info.json")
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with open(dropbox_file) as dbf:
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dbconfig = json.loads(dbf.read())
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def authorize(self):
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flow = dropbox.client.DropboxOAuth2FlowNoRedirect(self.app_key, self.app_secret)
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authorize_url = flow.start()
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print '1. Go to: ' + authorize_url
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print '2. Click "Allow" (you might have to log in first)'
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print '3. Copy the authorization code.'
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code = raw_input("Enter the authorization code here: ").strip()
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access_token, user_id = flow.finish(code)
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self.access_token = access_token
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self.user_id = user_id
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creds = {"app_key": self.app_key,
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"app_secret": self.app_secret,
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"access_token": self.access_token,
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"user_id": self.user_id}
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# Save so we don't have to do this again.
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with open("credentials.json", "w") as f:
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f.write(json.dumps(creds))
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def _open_file_frame(self, filename, date_cols):
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if DROPBOX:
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L.info("Getting file from Dropbox")
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client = dropbox.client.DropboxClient(self.access_token)
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L.info("Got file from Dropbox")
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f = client.get_file(filename)
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if "business" in dbconfig:
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dropbox_dir = dbconfig['business']['path'] + "/*.xls"
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elif "personal" in dbconfig:
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dropbox_dir = dbconfig['personal']['path'] + "/*.xls"
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else:
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f = os.path.normpath(local_dropbox_path + filename)
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dropbox_dir = os.path.expanduser("~")
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if filename[-4:] == ".csv":
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df = pd.read_csv(f, parse_dates=date_cols, encoding='utf-8')
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return dropbox_dir
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def _get_dataframe_by_extension(self, path, date_cols):
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"""
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Gets a dataframe either by .csv, or .xls(x),
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or erroring and exiting.
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"""
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_, ext = os.path.splitext(path)
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if ext == ".csv":
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df = pd.read_csv(path, parse_dates=date_cols, encoding='utf-8')
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elif ext in [".xlsx", ".xls"]:
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df = pd.read_excel(path, parse_dates=date_cols, encoding='utf-8')
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else:
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df = pd.read_excel(f, parse_dates=date_cols, encoding='utf-8')
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easygui.msgbox("File was not of type {0}.\nQuitting".format(
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" ".join(self.ACCEPTABLE_EXTENSIONS)),
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"ERROR")
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sys.exit(1)
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return df
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def get_dataframes(self):
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@ -85,28 +111,67 @@ class AttributionReport(object):
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This gets the Salesforce and the Deposit dataframes.
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Then it does some cleanup of the columns
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"""
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salesforce_data_name = '/Addgene Shared/Dev/Attribution Report/salesforce_report.xlsx'
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salesforce_df = self._open_file_frame(salesforce_data_name, date_cols=[4, 5])
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salesforce_df, deposit_df = self.get_files()
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# Get rid of the footer that Salesforce adds.
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if self.footer_length:
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length_with_footer = len(salesforce_df.index)
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salesforce_df = salesforce_df.head(length_with_footer - self.footer_length)
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deposit_data_name = 'Addgene Shared/Dev/Attribution Report/deposit_data.csv'
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deposit_df = self._open_file_frame(deposit_data_name, date_cols=[7, 8])
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# Clean up Salesforce
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salesforce_df['Account Description'].fillna('', inplace=True)
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salesforce_df.sort(SF_DATE, ascending=1)
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salesforce_df["Full Name"] = salesforce_df["First Name"].map(unicode) + " " + salesforce_df["Last Name"]
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del salesforce_df["First Name"]
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del salesforce_df["Last Name"]
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# Cleanup Deposit Data
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deposit_df['Org Name'].fillna('', inplace=True)
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deposit_df.sort(DP_DATE, ascending=1)
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deposit_df['PI_Name'].astype(unicode)
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# Cleanup not needed columns
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for col in self.SF_TRIM_COLUMNS:
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del salesforce_df[col]
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for col in self.DP_TRIM_COLUMNS:
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del deposit_df[col]
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return salesforce_df, deposit_df
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def get_files(self):
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salesforce_data_name = easygui.fileopenbox("Salesforce Export",
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default=self.DEFAULT_DIR,
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filetypes=self.ACCEPTABLE_EXTENSIONS)
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if salesforce_data_name == ".":
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easygui.msgbox("You did not select a Salesforce Export, stopping program.",
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"Good Bye")
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sys.exit(1)
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salesforce_df = self._get_dataframe_by_extension(salesforce_data_name, date_cols=[4, 5])
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if set(self.REQUIRED_SF_COLUMNS) < set(salesforce_df.columns):
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L.info("Proper columns")
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else:
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L.info("Wrong columns")
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easygui.msgbox("At a minimum, the Salesforce file must have the following columns:\n\n"
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"{0}\n\n"
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"Please re-run and select a proper file.".format(", ".join(self.REQUIRED_SF_COLUMNS)),
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"Incorrect columns")
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sys.exit(1)
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deposit_data_name = easygui.fileopenbox("Deposit Data",
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default=self.DEFAULT_DIR,
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filetypes=self.ACCEPTABLE_EXTENSIONS)
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if deposit_data_name == ".":
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easygui.msgbox("You did not select a Deposit Data Export, stopping program.",
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"Good Bye")
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sys.exit(1)
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deposit_df = self._get_dataframe_by_extension(deposit_data_name, date_cols=[7, 8])
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if set(self.REQUIRED_DP_COLUMNS) < set(deposit_df.columns):
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L.info("Proper columns")
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else:
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L.info("Wrong columns")
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easygui.msgbox("At a minimum, the Deposit Data file must have the following columns:\n\n"
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"{0}\n\n"
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"Please re-run and select a proper file.".format(", ".join(self.REQUIRED_DP_COLUMNS)),
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"Incorrect columns")
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sys.exit(1)
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return salesforce_df, deposit_df
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def get_filtered(self, filtered_df, sf_row, pi_name, pi_org, kind):
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@ -176,31 +241,42 @@ class AttributionReport(object):
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mismatches.extend(by_org)
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double_matches.extend(by_both)
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return {"PI": pd.DataFrame(name_matches, columns=self.column_order),
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"Institute": pd.DataFrame(org_matches, columns=self.column_order),
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"Double": pd.DataFrame(double_matches, columns=self.column_order),
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"Single": pd.DataFrame(mismatches, columns=self.column_order)}
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return (
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("PI", pd.DataFrame(name_matches, columns=self.OUTPUT_COLUMN_ORDER)),
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("Institute", pd.DataFrame(org_matches, columns=self.OUTPUT_COLUMN_ORDER)),
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("Double", pd.DataFrame(double_matches, columns=self.OUTPUT_COLUMN_ORDER)),
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("Single", pd.DataFrame(mismatches, columns=self.OUTPUT_COLUMN_ORDER))
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)
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def run(self):
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frames = self.get_attribution_dataframes()
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for key, df in frames.items():
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fname = '{0}_Attribution_Report_{1}_Match.xlsx'.format(
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datetime.date.today(),
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key)
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print "Writing", fname
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writer = pd.ExcelWriter(
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fname,
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dirname = easygui.diropenbox("Where to save reports?", "Select Report Output Directory", self.DEFAULT_DIR)
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if not dirname:
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dirname = self.DEFAULT_DIR
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engine='xlsxwriter')
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for key, df in frames:
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fname = '{0}_Attribution_Report_{1}_Match.xlsx'.format(datetime.date.today(), key)
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xls_path = os.path.join(dirname, fname)
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print "Writing", xls_path
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writer = pd.ExcelWriter(xls_path,
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engine='xlsxwriter')
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df.to_excel(writer,
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sheet_name='Sheet1',
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index=False)
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writer.save()
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if __name__ == '__main__':
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report = AttributionReport(credentials_file="credentials.json",
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def main():
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try:
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report = AttributionReport(credentials_file="credentials.json",
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months=6,
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footer_length=6)
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report.run()
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report.run()
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except:
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easygui.exceptionbox()
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if __name__ == '__main__':
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main()
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@ -5,4 +5,5 @@ python-dateutil
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xlwt
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#openpyxl==1.8.6
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xlsxwriter
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progressbar==2.3
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progressbar==2.3
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easygui
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